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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8436 and 8437 are separated by 196 nucleotides
8437 and 8438 are separated by 202 nucleotides
8438 and 8439 are separated by 490 nucleotides
8439 and 8440 are separated by 214 nucleotides
mRNA_68: 8436 - K12599 SKI2, SKIV2L antiviral helicase SKI2, at 158,685 to 163,751
8436
mRNA_69: 8437 - K03029 PSMD4, RPN10 26S proteasome regulatory subunit N10, at 163,948 to 165,826
8437
mRNA_70: 8438 - HMMPfam-Membrane-associating domain-PF01284, at 166,029 to 167,085
8438
mRNA_71: 8439 - HMMPfam-YABBY protein-PF04690,SUPERFAMILY--SSF47095, at 167,576 to 168,117
8439
mRNA_72: 8440 - BLAST apses-domain-containing protein [Moesziomyces ant..., at 168,332 to 168,818
8440
Group
Condition
mRNA
_68
mRNA
_69
mRNA
_70
mRNA
_71
mRNA
_72
8436
8437
8438
8439
8440
facs on lipid accumulation
Sorted High BODIPY Gate
-1.3
-0.3
+0.3
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
-0.3
+0.5
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
-0.2
+0.5
N.D.
-0.2
growth on oleic acid
YNB Glucose
-0.9
-0.2
+0.4
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-1.1
-0.2
+0.9
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
+0.0
+0.7
N.D.
-0.6
growth on ricinoleic acid
YNB Glucose
-0.7
-0.0
+0.8
N.D.
-0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.9
-0.1
+0.8
N.D.
-0.1
auxotrophy
YNB Glucose
-0.7
-0.1
+0.8
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.2
+0.1
N.D.
+0.1
auxotrophy
Dropout Complete
-0.9
+0.1
+1.2
N.D.
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.2
+0.6
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.6
-0.1
N.D.
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+1.3
+0.1
-0.7
N.D.
-0.0
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
+1.2
N.D.
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.3
+0.8
N.D.
+0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.3
+0.5
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-1.1
+1.2
N.D.
+0.4
growth on ypd
YPD
+0.6
-0.0
-0.1
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.4
+0.8
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.2
+0.6
N.D.
+0.3
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