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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8437 and 8438 are separated by 202 nucleotides
8438 and 8439 are separated by 490 nucleotides
8439 and 8440 are separated by 214 nucleotides
8440 and 8441 are separated by 1008 nucleotides
mRNA_69: 8437 - K03029 PSMD4, RPN10 26S proteasome regulatory subunit N10, at 163,948 to 165,826
8437
mRNA_70: 8438 - HMMPfam-Membrane-associating domain-PF01284, at 166,029 to 167,085
8438
mRNA_71: 8439 - HMMPfam-YABBY protein-PF04690,SUPERFAMILY--SSF47095, at 167,576 to 168,117
8439
mRNA_72: 8440 - BLAST apses-domain-containing protein [Moesziomyces ant..., at 168,332 to 168,818
8440
mRNA_73: 8441 - K00698 CHS1 chitin synthase, at 169,827 to 173,814
8441
Group
Condition
mRNA
_69
mRNA
_70
mRNA
_71
mRNA
_72
mRNA
_73
8437
8438
8439
8440
8441
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.7
N.D.
-0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.3
N.D.
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
N.D.
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.5
N.D.
-0.2
-0.2
growth on oleic acid
YNB Glucose
-0.2
+0.4
N.D.
+0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.7
N.D.
-0.6
+0.1
growth on ypd
YPD
-0.0
-0.1
N.D.
+0.4
-0.1
growth on ricinoleic acid
YNB Glucose
-0.0
+0.8
N.D.
-0.5
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.5
N.D.
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.1
+1.2
N.D.
+0.4
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.8
N.D.
-0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.6
N.D.
-0.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.9
N.D.
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.6
N.D.
+0.3
-0.5
auxotrophy
YNB Glucose
-0.1
+0.8
N.D.
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
-0.1
N.D.
+0.4
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.8
N.D.
+0.4
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
+1.2
N.D.
-0.3
+0.0
auxotrophy
Dropout Complete
+0.1
+1.2
N.D.
-0.4
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.5
N.D.
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.8
N.D.
+0.3
+0.2
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