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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8439 and 8440 are separated by 214 nucleotides
8440 and 8441 are separated by 1008 nucleotides
8441 and 8442 are separated by 274 nucleotides
8442 and 8443 are separated by 410 nucleotides
mRNA_71: 8439 - HMMPfam-YABBY protein-PF04690,SUPERFAMILY--SSF47095, at 167,576 to 168,117
8439
mRNA_72: 8440 - BLAST apses-domain-containing protein [Moesziomyces ant..., at 168,332 to 168,818
8440
mRNA_73: 8441 - K00698 CHS1 chitin synthase, at 169,827 to 173,814
8441
mRNA_74: 8442 - KOG3600 Thyroid hormone receptor-associated protein complex, subunit TRAP240, at 174,089 to 180,350
8442
mRNA_75: 8443 - K00606 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 180,761 to 182,108
8443
Group
Condition
mRNA
_71
mRNA
_72
mRNA
_73
mRNA
_74
mRNA
_75
8439
8440
8441
8442
8443
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.0
-0.1
-0.4
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
-0.2
-0.5
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
+0.3
-1.0
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.1
+0.2
-0.5
-0.0
growth on ricinoleic acid
YNB Glucose
N.D.
-0.5
+0.1
+0.1
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.6
+0.1
-0.2
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
-0.1
-0.3
+0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.1
-0.0
-0.0
auxotrophy
Dropout Complete
N.D.
-0.4
-0.1
-0.0
+0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.4
-0.0
-0.1
-0.2
growth on oleic acid
YNB Glucose
N.D.
+0.1
-0.2
+0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.1
-0.1
-0.0
growth on oleic acid
YNB Oleic Acid
N.D.
-0.3
+0.0
+0.1
+0.3
growth on ypd
YPD
N.D.
+0.4
-0.1
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.3
-0.5
-0.2
+0.6
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
+0.1
+0.1
+0.3
auxotrophy
YNB Glucose
N.D.
-0.2
+0.3
-0.0
+0.5
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
+0.2
-0.1
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.4
-0.1
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
+0.2
-0.1
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.4
+0.0
-0.1
+0.6
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