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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8446 and 8447 are separated by 498 nucleotides
8447 and 8448 are separated by 282 nucleotides
8448 and 8449 are separated by 263 nucleotides
8449 and 8450 are separated by 477 nucleotides
mRNA_78: 8446 - HMMPfam-NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4)-PF07225, at 185,623 to 186,207
8446
mRNA_79: 8447 - K04906 KCNH3 potassium voltage-gated channel Eag-related subfamily H member 3, at 186,706 to 188,932
8447
mRNA_80: 8448 - K04911 KCNH8 potassium voltage-gated channel Eag-related subfamily H member 8, at 189,215 to 191,649
8448
mRNA_81: 8449 - K12176 COPS2, CSN2, TRIP15 COP9 signalosome complex subunit 2, at 191,913 to 194,364
8449
mRNA_82: 8450 - KOG0519 Sensory transduction histidine kinase, at 194,842 to 197,479
8450
Group
Condition
mRNA
_78
mRNA
_79
mRNA
_80
mRNA
_81
mRNA
_82
8446
8447
8448
8449
8450
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.4
+0.0
-1.3
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
-0.1
-1.3
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
-0.1
-1.5
+0.1
growth on oleic acid
YNB Glucose
N.D.
-0.9
+0.1
-0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
+0.1
-0.7
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.3
-0.0
-0.5
+0.1
auxotrophy
Dropout Complete
N.D.
-0.2
-0.0
-0.5
+0.1
auxotrophy
YNB Glucose
N.D.
-0.2
+0.2
-0.5
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.0
-0.8
+0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.3
-0.5
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.3
+0.0
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
-0.2
-0.3
-0.0
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
+0.1
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.3
+0.2
+0.0
-0.1
growth on ypd
YPD
N.D.
-0.7
+0.6
-0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
-0.1
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
+0.0
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.3
+0.1
+0.0
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
+0.0
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.0
+0.1
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.1
+0.7
-0.0
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