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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8448 and 8449 are separated by 263 nucleotides
8449 and 8450 are separated by 477 nucleotides
8450 and 8451 are separated by 48 nucleotides
8451 and 8452 are separated by 507 nucleotides
mRNA_80: 8448 - K04911 KCNH8 potassium voltage-gated channel Eag-related subfamily H member 8, at 189,215 to 191,649
8448
mRNA_81: 8449 - K12176 COPS2, CSN2, TRIP15 COP9 signalosome complex subunit 2, at 191,913 to 194,364
8449
mRNA_82: 8450 - KOG0519 Sensory transduction histidine kinase, at 194,842 to 197,479
8450
mRNA_83: 8451 - Hypothetical Protein, at 197,528 to 201,315
8451
mRNA_84: 8452 - K01522 FHIT bis(5'-adenosyl)-triphosphatase, at 201,823 to 202,716
8452
Group
Condition
mRNA
_80
mRNA
_81
mRNA
_82
mRNA
_83
mRNA
_84
8448
8449
8450
8451
8452
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
+0.3
+0.1
-0.5
-2.7
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-1.5
+0.1
+0.1
-1.8
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-1.3
-0.0
-0.0
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-1.3
-0.2
-0.4
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.3
-0.0
+0.0
-0.7
growth on oleic acid
YNB Oleic Acid
-0.0
-0.5
+0.1
+0.4
-1.0
ypd buoyancy
40 hrs High Buoyancy
-0.5
-0.3
+0.1
+0.3
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.7
-0.1
-0.5
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.2
+0.2
-0.1
-1.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.0
+0.2
-0.0
-0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
+0.1
+0.1
-0.0
growth on oleic acid
YNB Glucose
+0.1
-0.2
+0.1
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.7
-0.0
-0.0
-0.5
auxotrophy
YNB Glucose
+0.2
-0.5
+0.0
-0.0
+0.6
auxotrophy
Dropout Complete
-0.0
-0.5
+0.1
-0.1
+0.9
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.1
-0.0
-0.0
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.5
+0.1
+0.3
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.0
+0.1
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.0
-0.1
-0.2
+0.6
growth on ricinoleic acid
YNB Glucose
+0.1
-0.2
+0.1
-0.3
+1.1
growth on ypd
YPD
+0.6
-0.0
+0.2
+0.2
-0.2
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