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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8453 and 8454 are separated by 301 nucleotides
8454 and 8455 are separated by 339 nucleotides
8455 and 8456 are separated by 465 nucleotides
8456 and 8457 are separated by 1086 nucleotides
mRNA_85: 8453 - BLAST glutamine synthetase [Sanghuangporus baumii], at 203,010 to 204,516
8453
mRNA_86: 8454 - K01452 E3.5.1.41 chitin deacetylase, at 204,818 to 206,685
8454
mRNA_87: 8455 - BLAST HAP1, N-terminal [Xanthophyllomyces dendrorhous], at 207,025 to 210,193
8455
mRNA_88: 8456 - K17361 ACOT9 acyl-coenzyme A thioesterase 9, at 210,659 to 212,272
8456
mRNA_89: 8457 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 213,359 to 214,966
8457
Group
Condition
mRNA
_85
mRNA
_86
mRNA
_87
mRNA
_88
mRNA
_89
8453
8454
8455
8456
8457
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.4
-0.2
-0.8
+0.1
auxotrophy
Dropout Complete
-0.4
-0.5
+0.2
-0.4
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.4
+0.3
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.3
-0.1
-0.4
-0.2
auxotrophy
YNB Glucose
-0.2
-0.5
+0.3
-0.3
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.5
+0.4
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.0
+0.0
-0.7
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.7
+0.3
-0.2
-0.1
growth on oleic acid
YNB Glucose
-0.2
-0.4
-0.0
-0.0
+0.3
growth on oleic acid
YNB Oleic Acid
+0.0
-0.4
+0.0
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.2
-0.3
+0.0
+0.1
growth on ypd
YPD
+0.1
-0.1
+0.0
-0.0
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.0
-0.1
-0.0
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.2
+0.3
-0.2
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.0
+0.1
-0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.1
+0.1
+0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.3
-0.2
+0.5
-0.0
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
+0.1
+0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.1
+0.4
+0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.2
+0.1
-0.0
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.2
-0.7
+0.5
+0.3
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