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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8455 and 8456 are separated by 465 nucleotides
8456 and 8457 are separated by 1086 nucleotides
8457 and 8458 are separated by 363 nucleotides
8458 and 8459 are separated by 219 nucleotides
mRNA_87: 8455 - BLAST HAP1, N-terminal [Xanthophyllomyces dendrorhous], at 207,025 to 210,193
8455
mRNA_88: 8456 - K17361 ACOT9 acyl-coenzyme A thioesterase 9, at 210,659 to 212,272
8456
mRNA_89: 8457 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 213,359 to 214,966
8457
mRNA_90: 8458 - Hypothetical Protein, at 215,330 to 215,955
8458
mRNA_91: 8459 - HMMPfam-Domain of unknown function (DUF4604)-PF15377, at 216,175 to 216,894
8459
Group
Condition
mRNA
_87
mRNA
_88
mRNA
_89
mRNA
_90
mRNA
_91
8455
8456
8457
8458
8459
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.7
-0.0
+0.4
-1.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.1
-0.4
-0.5
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.3
-0.1
-0.5
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.0
-0.2
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.8
+0.1
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.4
-0.2
-0.1
+0.3
growth on ypd
YPD
+0.0
-0.0
-0.3
-0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.0
+0.3
-0.1
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.1
-0.1
-0.0
-0.7
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
+0.3
-0.3
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.0
-0.2
+0.2
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.0
+0.1
+0.0
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
+0.5
+0.3
+0.3
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.5
-0.0
-0.2
-0.2
growth on oleic acid
YNB Oleic Acid
+0.0
+0.1
-0.1
-0.2
+0.0
auxotrophy
Dropout Complete
+0.2
-0.4
-0.1
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.2
-0.1
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.2
-0.2
+0.1
-0.0
growth on oleic acid
YNB Glucose
-0.0
-0.0
+0.3
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.2
-0.0
+0.1
+0.1
auxotrophy
YNB Glucose
+0.3
-0.3
-0.2
+0.4
+0.2
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