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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8457 and 8458 are separated by 363 nucleotides
8458 and 8459 are separated by 219 nucleotides
8459 and 8460 are separated by 478 nucleotides
8460 and 8461 are separated by 1037 nucleotides
mRNA_89: 8457 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 213,359 to 214,966
8457
mRNA_90: 8458 - Hypothetical Protein, at 215,330 to 215,955
8458
mRNA_91: 8459 - HMMPfam-Domain of unknown function (DUF4604)-PF15377, at 216,175 to 216,894
8459
mRNA_92: 8460 - KOG2914 Predicted haloacid-halidohydrolase and related hydrolases, at 217,373 to 218,871
8460
mRNA_93: 8461 - ProSiteProfiles-BTB domain profile.-PS50097, at 219,909 to 221,427
8461
Group
Condition
mRNA
_89
mRNA
_90
mRNA
_91
mRNA
_92
mRNA
_93
8457
8458
8459
8460
8461
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.4
-1.1
-0.4
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.5
-0.2
-0.2
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.5
-0.7
-0.0
+0.5
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.2
-0.2
-0.4
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.1
-0.6
-0.1
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.2
-0.3
-0.2
+0.1
growth on ricinoleic acid
YNB Glucose
+0.3
-0.3
-0.5
-0.4
+0.3
growth on ypd
YPD
-0.3
-0.0
-0.1
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.1
+0.0
-0.4
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
-0.0
-0.3
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
-0.0
-0.4
+0.1
auxotrophy
Dropout Complete
-0.1
-0.1
+0.3
-0.0
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.0
+0.1
-0.3
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
-0.2
+0.0
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.1
+0.3
-0.6
+0.4
auxotrophy
YNB Glucose
-0.2
+0.4
+0.2
-0.1
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.2
-0.4
+0.4
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.1
+0.1
-0.0
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.0
-0.7
+0.2
+0.7
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.3
-0.5
-0.1
+0.2
growth on oleic acid
YNB Glucose
+0.3
+0.2
-0.2
+0.4
-0.2
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