Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 8458 and 8459 are separated by 219 nucleotides8459 and 8460 are separated by 478 nucleotides8460 and 8461 are separated by 1037 nucleotides8461 and 8462 are separated by 151 nucleotides mRNA_90: 8458 - Hypothetical Protein, at 215,330 to 215,955 8458 mRNA_91: 8459 - HMMPfam-Domain of unknown function (DUF4604)-PF15377, at 216,175 to 216,894 8459 mRNA_92: 8460 - KOG2914 Predicted haloacid-halidohydrolase and related hydrolases, at 217,373 to 218,871 8460 mRNA_93: 8461 - ProSiteProfiles-BTB domain profile.-PS50097, at 219,909 to 221,427 8461 mRNA_94: 8462 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 221,579 to 223,787 8462
Group Condition mRNA_90 mRNA_91 mRNA_92 mRNA_93 mRNA_94
8458 8459 8460 8461 8462
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.4 -1.1 -0.4 -0.8 +0.1
facs on lipid accumulation Sorted High BODIPY Gate -0.5 -0.2 -0.2 -0.5 -0.2
ypd buoyancy 40 hrs High Buoyancy -0.2 -0.2 -0.4 -0.3 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.0 +0.1 -0.3 -0.2 -0.3
growth on ricinoleic acid YNB Methylricinoleic Acid -0.5 -0.7 -0.0 +0.5 +0.2
ypd buoyancy 40 hrs Median Buoyancy +0.0 -0.0 -0.3 -0.3 -0.0
growth on ricinoleic acid YNB Glucose -0.3 -0.5 -0.4 +0.3 +0.4
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 -0.6 -0.1 -0.4 +0.7
auxotrophy Dropout Complete -0.1 +0.3 -0.0 -0.4 -0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 +0.0 -0.4 +0.0 -0.0
growth on oleic acid YNB Oleic Acid -0.2 +0.0 -0.2 +0.1 -0.1
auxotrophy YNB Glucose 75mM Methionine +0.1 -0.0 -0.4 +0.1 -0.0
ypd buoyancy 40 hrs Low Buoyancy -0.2 -0.3 -0.2 +0.1 +0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.1 +0.3 -0.6 +0.4 -0.2
auxotrophy YNB Glucose 75mM Arginine +0.1 +0.1 -0.0 -0.2 -0.0
auxotrophy YNB Glucose +0.4 +0.2 -0.1 -0.6 +0.1
ypd buoyancy 40 hrs No Buoyancy Separation +0.3 -0.5 -0.1 +0.2 +0.2
facs on lipid accumulation Sorted No BODIPY Gate +0.2 -0.4 +0.4 -0.2 +0.1
growth on ypd YPD -0.0 -0.1 -0.1 -0.1 +0.3
growth on oleic acid YNB Glucose +0.2 -0.2 +0.4 -0.2 +0.1
growth on ricinoleic acid YNB Ricinoleic Acid -0.0 -0.7 +0.2 +0.7 +0.5
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