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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8459 and 8460 are separated by 478 nucleotides
8460 and 8461 are separated by 1037 nucleotides
8461 and 8462 are separated by 151 nucleotides
8462 and 8463 are separated by 905 nucleotides
mRNA_91: 8459 - HMMPfam-Domain of unknown function (DUF4604)-PF15377, at 216,175 to 216,894
8459
mRNA_92: 8460 - KOG2914 Predicted haloacid-halidohydrolase and related hydrolases, at 217,373 to 218,871
8460
mRNA_93: 8461 - ProSiteProfiles-BTB domain profile.-PS50097, at 219,909 to 221,427
8461
mRNA_94: 8462 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 221,579 to 223,787
8462
mRNA_95: 8463 - K14408 CSTF3, RNA14 cleavage stimulation factor subunit 3, at 224,693 to 228,325
8463
Group
Condition
mRNA
_91
mRNA
_92
mRNA
_93
mRNA
_94
mRNA
_95
8459
8460
8461
8462
8463
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.1
-0.4
-0.8
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.2
-0.5
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.4
-0.3
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.3
-0.2
-0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.3
-0.3
-0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.1
-0.4
+0.7
N.D.
auxotrophy
YNB Glucose
+0.2
-0.1
-0.6
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.4
+0.1
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.4
+0.0
-0.0
N.D.
auxotrophy
Dropout Complete
+0.3
-0.0
-0.4
-0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.1
+0.2
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
-0.5
-0.4
+0.3
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.0
-0.2
-0.0
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
-0.2
+0.1
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.4
-0.2
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.2
+0.1
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.6
+0.4
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
-0.0
+0.5
+0.2
N.D.
growth on oleic acid
YNB Glucose
-0.2
+0.4
-0.2
+0.1
N.D.
growth on ypd
YPD
-0.1
-0.1
-0.1
+0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
+0.2
+0.7
+0.5
N.D.
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