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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8463 and 8464 are separated by 119 nucleotides
8464 and 8465 are separated by 195 nucleotides
8465 and 8466 are separated by 706 nucleotides
8466 and 8467 are separated by 934 nucleotides
mRNA_95: 8463 - K14408 CSTF3, RNA14 cleavage stimulation factor subunit 3, at 224,693 to 228,325
8463
mRNA_96: 8464 - KOG4031 Vesicle coat protein clathrin, light chain, at 228,445 to 229,589
8464
mRNA_97: 8465 - KOG2234 Predicted UDP-galactose transporter, at 229,785 to 233,167
8465
mRNA_98: 8466 - Hypothetical Protein, at 233,874 to 234,659
8466
mRNA_99: 8467 - HMMPfam-Fungal cellulose binding domain-PF00734,HMMPfam-GlcNAc-PI de-N-acetylase-PF02585,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-Coagulation factors 5/8 type C domain (FA58C) profile.-PS50022,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF102588,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF57180, at 235,594 to 240,654
8467
Group
Condition
mRNA
_95
mRNA
_96
mRNA
_97
mRNA
_98
mRNA
_99
8463
8464
8465
8466
8467
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.2
-0.3
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.3
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.1
-0.3
-0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.3
+0.2
-0.3
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.3
-0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.0
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.0
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.2
-0.4
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.1
-0.3
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
-0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.1
-0.4
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.2
+0.1
+0.0
auxotrophy
Dropout Complete
N.D.
N.D.
-0.0
-0.0
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.1
-0.1
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.1
+0.0
-0.0
auxotrophy
YNB Glucose
N.D.
N.D.
-0.2
+0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.0
+0.3
-0.1
growth on ypd
YPD
N.D.
N.D.
-0.0
+0.5
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.0
+0.3
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.2
+0.3
+0.2
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