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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8465 and 8466 are separated by 706 nucleotides
8466 and 8467 are separated by 934 nucleotides
8467 and 8468 are separated by 682 nucleotides
8468 and 8469 are separated by 605 nucleotides
mRNA_97: 8465 - KOG2234 Predicted UDP-galactose transporter, at 229,785 to 233,167
8465
mRNA_98: 8466 - Hypothetical Protein, at 233,874 to 234,659
8466
mRNA_99: 8467 - HMMPfam-Fungal cellulose binding domain-PF00734,HMMPfam-GlcNAc-PI de-N-acetylase-PF02585,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-Coagulation factors 5/8 type C domain (FA58C) profile.-PS50022,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF102588,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF57180, at 235,594 to 240,654
8467
mRNA_100: 8468 - K03686 dnaJ molecular chaperone DnaJ, at 241,337 to 243,142
8468
mRNA_101: 8469 - K18719 NUP82 nucleoporin NUP82, at 243,748 to 246,867
8469
Group
Condition
mRNA
_97
mRNA
_98
mRNA
_99
mRNA
_100
mRNA
_101
8465
8466
8467
8468
8469
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.3
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.3
-0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.3
-0.1
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.3
+0.2
-0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
-0.1
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.1
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.1
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.4
-0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.3
+0.0
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.2
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.4
+0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
+0.0
N.D.
N.D.
auxotrophy
Dropout Complete
-0.0
-0.0
-0.0
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.1
+0.2
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
+0.0
-0.0
N.D.
N.D.
auxotrophy
YNB Glucose
-0.2
+0.1
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.3
-0.1
N.D.
N.D.
growth on ypd
YPD
-0.0
+0.5
-0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.3
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.3
+0.2
N.D.
N.D.
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