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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8475 and 8476 are separated by 438 nucleotides
8476 and 8477 are separated by 108 nucleotides
8477 and 8478 are separated by 267 nucleotides
8478 and 8479 are separated by 112 nucleotides
mRNA_107: 8475 - K08592 SENP1 sentrin-specific protease 1, at 257,033 to 257,891
8475
mRNA_108: 8476 - Hypothetical Protein, at 258,330 to 258,956
8476
mRNA_109: 8477 - Hypothetical Protein, at 259,065 to 259,869
8477
mRNA_110: 8478 - KOG3399 Predicted Yippee-type zinc-binding protein, at 260,137 to 260,817
8478
mRNA_111: 8479 - KOG0254 Predicted transporter (major facilitator superfamily), at 260,930 to 263,760
8479
Group
Condition
mRNA
_107
mRNA
_108
mRNA
_109
mRNA
_110
mRNA
_111
8475
8476
8477
8478
8479
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.6
-1.8
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.9
+0.4
-0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.5
-1.1
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.7
-0.9
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.6
+0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+1.5
-1.4
+0.6
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.4
-0.3
+0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+1.0
-0.3
+0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+1.1
+0.2
-0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.9
+0.2
+0.2
auxotrophy
YNB Glucose
N.D.
N.D.
+1.3
-0.3
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+1.4
-0.2
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.5
+0.4
+0.6
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+1.7
+0.0
-0.1
growth on ypd
YPD
N.D.
N.D.
+1.0
+0.0
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+1.2
-0.1
+0.6
auxotrophy
Dropout Complete
N.D.
N.D.
+2.0
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+1.5
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+1.8
+0.6
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+1.4
+0.4
+0.7
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