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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8478 and 8479 are separated by 112 nucleotides
8479 and 8480 are separated by 396 nucleotides
8480 and 8481 are separated by 114 nucleotides
8481 and 8482 are separated by 348 nucleotides
mRNA_110: 8478 - KOG3399 Predicted Yippee-type zinc-binding protein, at 260,137 to 260,817
8478
mRNA_111: 8479 - KOG0254 Predicted transporter (major facilitator superfamily), at 260,930 to 263,760
8479
mRNA_112: 8480 - K10899 RECQL ATP-dependent DNA helicase Q1, at 264,157 to 266,973
8480
mRNA_113: 8481 - KOG0209 P-type ATPase, at 267,088 to 267,405
8481
mRNA_114: 8482 - K10862 TDP1 tyrosyl-DNA phosphodiesterase 1, at 267,754 to 270,066
8482
Group
Condition
mRNA
_110
mRNA
_111
mRNA
_112
mRNA
_113
mRNA
_114
8478
8479
8480
8481
8482
facs on lipid accumulation
Sorted High BODIPY Gate
-1.8
-0.0
+0.3
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.4
+0.6
+0.1
-0.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.1
+0.4
-0.3
+0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
-0.0
+0.3
+0.4
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-0.8
+0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.6
-0.1
-0.3
-0.2
auxotrophy
YNB Glucose
-0.3
+0.3
-0.1
+0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.9
-0.1
-0.7
+0.3
growth on ypd
YPD
+0.0
+0.6
-0.2
-0.4
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.1
-0.0
-0.4
+0.3
growth on oleic acid
YNB Glucose
+0.2
+0.2
-0.1
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
-0.0
+0.0
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.1
-0.3
+0.7
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.1
-0.3
+0.6
+0.0
growth on oleic acid
YNB Oleic Acid
-0.2
+0.2
-0.1
+0.4
+0.2
auxotrophy
Dropout Complete
+0.0
-0.3
-0.1
+1.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.7
+0.0
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.5
+0.1
+0.7
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
-0.1
+0.4
-0.0
+0.1
growth on ricinoleic acid
YNB Glucose
+0.4
+0.6
-0.0
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.1
+0.0
+1.0
-0.1
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