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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8480 and 8481 are separated by 114 nucleotides
8481 and 8482 are separated by 348 nucleotides
8482 and 8483 are separated by 328 nucleotides
8483 and 8484 are separated by 305 nucleotides
mRNA_112: 8480 - K10899 RECQL ATP-dependent DNA helicase Q1, at 264,157 to 266,973
8480
mRNA_113: 8481 - KOG0209 P-type ATPase, at 267,088 to 267,405
8481
mRNA_114: 8482 - K10862 TDP1 tyrosyl-DNA phosphodiesterase 1, at 267,754 to 270,066
8482
mRNA_115: 8483 - K14950 ATP13A1 cation-transporting ATPase 13A1, at 270,395 to 274,744
8483
mRNA_116: 8484 - K06072 DOHH deoxyhypusine monooxygenase, at 275,050 to 276,428
8484
Group
Condition
mRNA
_112
mRNA
_113
mRNA
_114
mRNA
_115
mRNA
_116
8480
8481
8482
8483
8484
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.3
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.7
+0.3
N.D.
N.D.
growth on ypd
YPD
-0.2
-0.4
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.3
-0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.1
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.4
+0.3
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.1
-0.3
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.2
+0.1
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.1
+0.0
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose
-0.1
+0.2
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
+0.1
+0.0
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.1
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.0
+0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.6
+0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.0
+0.1
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
+0.4
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.4
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.7
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.7
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+1.0
-0.1
N.D.
N.D.
auxotrophy
Dropout Complete
-0.1
+1.0
+0.2
N.D.
N.D.
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