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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8487 and 8488 are separated by 53 nucleotides
8488 and 8489 are separated by 155 nucleotides
8489 and 8490 are separated by 316 nucleotides
8490 and 8491 are separated by 54 nucleotides
mRNA_119: 8487 - KOG3595 Dyneins, heavy chain, at 280,209 to 281,206
8487
mRNA_120: 8488 - K10413 DYNC1H dynein heavy chain 1, cytosolic, at 281,260 to 295,239
8488
mRNA_121: 8489 - BLAST Pc20g03530 [Penicillium rubens Wisconsin 54-1255], at 295,395 to 296,134
8489
mRNA_122: 8490 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 296,451 to 297,684
8490
mRNA_123: 8491 - Hypothetical Protein, at 297,739 to 298,245
8491
Group
Condition
mRNA
_119
mRNA
_120
mRNA
_121
mRNA
_122
mRNA
_123
8487
8488
8489
8490
8491
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.3
-0.5
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-1.0
+0.0
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.5
-0.3
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.8
-0.9
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.1
+0.1
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.9
-0.8
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.0
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.3
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.3
+0.4
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.6
+0.1
-0.2
growth on ypd
YPD
N.D.
N.D.
+0.2
+0.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.1
+0.6
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
+0.3
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.3
+0.5
+0.1
auxotrophy
Dropout Complete
N.D.
N.D.
+0.4
+0.8
-0.2
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.8
+0.4
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.9
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+1.3
-0.2
+0.1
auxotrophy
YNB Glucose
N.D.
N.D.
+0.6
+0.7
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+1.3
+0.4
-0.0
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