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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8489 and 8490 are separated by 316 nucleotides
8490 and 8491 are separated by 54 nucleotides
8491 and 8492 are separated by 128 nucleotides
8492 and 8493 are separated by 364 nucleotides
mRNA_121: 8489 - BLAST Pc20g03530 [Penicillium rubens Wisconsin 54-1255], at 295,395 to 296,134
8489
mRNA_122: 8490 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 296,451 to 297,684
8490
mRNA_123: 8491 - Hypothetical Protein, at 297,739 to 298,245
8491
mRNA_124: 8492 - HMMPfam-Trehalose utilisation-PF06283,SUPERFAMILY--SSF52317, at 298,374 to 299,465
8492
mRNA_125: 8493 - HMMPfam-Alpha/beta hydrolase family-PF12695,SUPERFAMILY--SSF53474, at 299,830 to 300,571
8493
Group
Condition
mRNA
_121
mRNA
_122
mRNA
_123
mRNA
_124
mRNA
_125
8489
8490
8491
8492
8493
ypd buoyancy
40 hrs No Buoyancy Separation
+0.9
-0.8
-0.1
-0.4
-5.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.3
-0.3
-0.2
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.8
-0.9
-0.6
+0.1
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.5
-0.4
-0.0
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-1.0
+0.0
-0.1
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
+0.1
-0.2
-0.3
-1.0
growth on ricinoleic acid
YNB Glucose
-0.0
+0.1
-0.1
+0.3
-1.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.1
-0.0
+0.2
-0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.1
+0.2
+0.1
-0.7
growth on oleic acid
YNB Oleic Acid
+0.3
+0.5
+0.1
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.1
-0.0
-0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.9
+0.1
+0.1
-0.0
-0.7
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.3
+0.3
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.6
-0.2
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.3
+0.4
-0.0
-0.5
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.4
-0.2
+0.2
+0.2
auxotrophy
Dropout Complete
+0.4
+0.8
-0.2
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.3
-0.2
+0.1
-0.1
+0.2
growth on oleic acid
YNB Glucose
+0.8
+0.4
-0.1
-0.3
+0.7
auxotrophy
YNB Glucose
+0.6
+0.7
+0.1
+0.4
+0.1
growth on ypd
YPD
+0.2
+0.0
+0.2
+0.2
+1.6
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