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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8490 and 8491 are separated by 54 nucleotides
8491 and 8492 are separated by 128 nucleotides
8492 and 8493 are separated by 364 nucleotides
8493 and 8494 are separated by 203 nucleotides
mRNA_122: 8490 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 296,451 to 297,684
8490
mRNA_123: 8491 - Hypothetical Protein, at 297,739 to 298,245
8491
mRNA_124: 8492 - HMMPfam-Trehalose utilisation-PF06283,SUPERFAMILY--SSF52317, at 298,374 to 299,465
8492
mRNA_125: 8493 - HMMPfam-Alpha/beta hydrolase family-PF12695,SUPERFAMILY--SSF53474, at 299,830 to 300,571
8493
mRNA_126: 8494 - Hypothetical Protein, at 300,775 to 301,342
8494
Group
Condition
mRNA
_122
mRNA
_123
mRNA
_124
mRNA
_125
mRNA
_126
8490
8491
8492
8493
8494
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
-0.1
-0.4
-5.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
-0.6
+0.1
-0.6
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.2
-0.3
-1.0
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.3
-0.2
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.0
-0.5
-0.4
-0.8
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-0.4
-0.0
+0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
-0.0
-0.7
-0.0
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
+0.3
-1.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.1
-0.1
+0.2
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.0
+0.2
-0.7
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.0
-0.1
+0.3
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.1
+0.1
+0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.2
+0.1
-0.7
+0.1
growth on oleic acid
YNB Oleic Acid
+0.5
+0.1
-0.3
-0.3
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.3
-0.1
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.6
-0.2
+0.2
+0.0
+0.1
auxotrophy
Dropout Complete
+0.8
-0.2
+0.3
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.2
+0.2
+0.2
+0.3
growth on oleic acid
YNB Glucose
+0.4
-0.1
-0.3
+0.7
+0.3
auxotrophy
YNB Glucose
+0.7
+0.1
+0.4
+0.1
+0.2
growth on ypd
YPD
+0.0
+0.2
+0.2
+1.6
+0.6
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