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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8492 and 8493 are separated by 364 nucleotides
8493 and 8494 are separated by 203 nucleotides
8494 and 8495 are separated by 2909 nucleotides
8495 and 8496 are separated by 388 nucleotides
mRNA_124: 8492 - HMMPfam-Trehalose utilisation-PF06283,SUPERFAMILY--SSF52317, at 298,374 to 299,465
8492
mRNA_125: 8493 - HMMPfam-Alpha/beta hydrolase family-PF12695,SUPERFAMILY--SSF53474, at 299,830 to 300,571
8493
mRNA_126: 8494 - Hypothetical Protein, at 300,775 to 301,342
8494
mRNA_127: 8495 - K11229 BCK1 mitogen-activated protein kinase kinase kinase, at 304,252 to 307,207
8495
mRNA_128: 8496 - K11592 DICER1, DCR1 endoribonuclease Dicer, at 307,596 to 312,359
8496
Group
Condition
mRNA
_124
mRNA
_125
mRNA
_126
mRNA
_127
mRNA
_128
8492
8493
8494
8495
8496
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-5.0
-0.1
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-1.0
-0.6
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.4
-0.8
+0.0
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.6
-0.3
+0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.7
-0.0
-0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.7
+0.1
-0.2
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.4
-0.2
+0.1
+0.0
growth on ricinoleic acid
YNB Glucose
+0.3
-1.1
+0.2
+0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.7
+0.1
-0.0
+0.1
growth on oleic acid
YNB Oleic Acid
-0.3
-0.3
-0.0
+0.3
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
+0.1
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.3
-0.4
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.2
-0.5
+0.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.0
-0.2
+0.2
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.0
+0.1
-0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.2
-0.0
+0.3
-0.1
auxotrophy
Dropout Complete
+0.3
-0.1
+0.1
+0.4
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
+0.3
-0.0
-0.0
growth on oleic acid
YNB Glucose
-0.3
+0.7
+0.3
-0.0
+0.1
auxotrophy
YNB Glucose
+0.4
+0.1
+0.2
+0.2
+0.1
growth on ypd
YPD
+0.2
+1.6
+0.6
-0.3
+0.1
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