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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8495 and 8496 are separated by 388 nucleotides
8496 and 8497 are separated by 635 nucleotides
8497 and 8498 are separated by 90 nucleotides
8498 and 8499 are separated by 186 nucleotides
mRNA_127: 8495 - K11229 BCK1 mitogen-activated protein kinase kinase kinase, at 304,252 to 307,207
8495
mRNA_128: 8496 - K11592 DICER1, DCR1 endoribonuclease Dicer, at 307,596 to 312,359
8496
mRNA_129: 8497 - SUPERFAMILY--SSF56112, at 312,995 to 315,210
8497
mRNA_130: 8498 - BLAST 60S ribosomal protein L18-B [Termitomyces sp. J132], at 315,301 to 316,369
8498
mRNA_131: 8499 - K11092 SNRPA1 U2 small nuclear ribonucleoprotein A', at 316,556 to 317,725
8499
Group
Condition
mRNA
_127
mRNA
_128
mRNA
_129
mRNA
_130
mRNA
_131
8495
8496
8497
8498
8499
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.0
+0.2
N.D.
-1.7
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.1
+0.3
N.D.
-1.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.1
+0.1
N.D.
-1.3
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.0
-0.3
N.D.
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.0
-0.0
N.D.
-0.8
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
-0.1
N.D.
-0.3
growth on oleic acid
YNB Oleic Acid
+0.3
+0.2
+0.1
N.D.
-1.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.0
-0.4
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
-0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.1
-0.1
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
-0.1
N.D.
-0.2
growth on oleic acid
YNB Glucose
-0.0
+0.1
+0.3
N.D.
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.0
-0.1
N.D.
-0.2
auxotrophy
YNB Glucose
+0.2
+0.1
-0.2
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
-0.0
N.D.
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.2
+0.5
N.D.
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
+0.3
N.D.
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.0
-0.4
N.D.
+0.7
auxotrophy
Dropout Complete
+0.4
+0.1
-0.1
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
+0.2
-0.0
-0.2
N.D.
+0.5
growth on ypd
YPD
-0.3
+0.1
+0.4
N.D.
+1.0
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