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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8500 and 8501 are separated by 418 nucleotides
8501 and 8502 are separated by 323 nucleotides
8502 and 8503 are separated by 602 nucleotides
8503 and 8504 are separated by 774 nucleotides
mRNA_132: 8500 - K16944 SEPT7, CDC3 septin 7, at 318,013 to 320,034
8500
mRNA_133: 8501 - Hypothetical Protein, at 320,453 to 321,837
8501
mRNA_134: 8502 - Hypothetical Protein, at 322,161 to 322,511
8502
mRNA_135: 8503 - HMMPfam-Protein kinase domain-PF00069,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 323,114 to 325,275
8503
mRNA_136: 8504 - HMMPfam-Aldose 1-epimerase-PF01263,SUPERFAMILY--SSF74650, at 326,050 to 327,675
8504
Group
Condition
mRNA
_132
mRNA
_133
mRNA
_134
mRNA
_135
mRNA
_136
8500
8501
8502
8503
8504
ypd buoyancy
40 hrs No Buoyancy Separation
-1.8
-0.3
-2.1
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.2
-0.5
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
-0.1
-0.5
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.2
+0.4
-0.6
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.6
+0.2
-0.1
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
-0.2
+0.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
+0.1
-0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.5
+0.4
+0.0
-0.0
+0.0
growth on oleic acid
YNB Glucose
-0.1
-0.1
-0.1
+0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
+0.0
-0.1
+0.6
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.0
+0.5
-0.4
+0.3
growth on ypd
YPD
-0.3
+0.0
+0.3
+0.2
+0.1
growth on oleic acid
YNB Oleic Acid
+0.0
-0.1
+0.3
-0.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.0
+0.5
+0.1
+0.1
auxotrophy
YNB Glucose
+0.1
+0.2
+0.2
-0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.0
+0.2
+0.6
+0.0
auxotrophy
Dropout Complete
+0.2
+0.2
+0.2
+0.1
+0.0
growth on ricinoleic acid
YNB Glucose
+0.1
-0.0
+0.4
+0.5
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
+0.2
+0.1
+0.0
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
+0.3
+0.3
+0.7
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+1.0
+0.6
+0.5
+0.2
+0.3
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