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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8503 and 8504 are separated by 774 nucleotides
8504 and 8505 are separated by 528 nucleotides
8505 and 8506 are separated by 312 nucleotides
8506 and 8507 are separated by 323 nucleotides
mRNA_135: 8503 - HMMPfam-Protein kinase domain-PF00069,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 323,114 to 325,275
8503
mRNA_136: 8504 - HMMPfam-Aldose 1-epimerase-PF01263,SUPERFAMILY--SSF74650, at 326,050 to 327,675
8504
mRNA_137: 8505 - SUPERFAMILY--SSF53474, at 328,204 to 331,764
8505
mRNA_138: 8506 - KOG4473 Uncharacterized membrane protein, at 332,077 to 333,617
8506
mRNA_139: 8507 - K14538 NUG1, GNL3 nuclear GTP-binding protein, at 333,941 to 336,511
8507
Group
Condition
mRNA
_135
mRNA
_136
mRNA
_137
mRNA
_138
mRNA
_139
8503
8504
8505
8506
8507
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.2
+0.4
-1.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.0
+0.2
-0.9
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.0
-0.2
-0.7
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
-0.2
-0.5
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
+0.0
+0.3
-1.7
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.1
-0.0
-0.4
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.1
-0.0
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
+0.0
+0.2
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.1
-0.0
-0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.2
+0.2
+0.2
N.D.
auxotrophy
Dropout Complete
+0.1
+0.0
-0.1
-0.0
N.D.
auxotrophy
YNB Glucose
-0.0
+0.2
-0.0
-0.2
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
+0.3
+0.1
-0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.3
+0.3
-0.8
N.D.
growth on ricinoleic acid
YNB Glucose
+0.5
+0.1
-0.1
-0.4
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
-0.0
+0.2
-0.6
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.2
+0.4
-0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
+0.1
+0.4
-0.7
N.D.
growth on oleic acid
YNB Glucose
+0.1
+0.2
+0.3
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.3
+0.3
+1.2
N.D.
growth on ypd
YPD
+0.2
+0.1
+0.4
+1.1
N.D.
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