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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8504 and 8505 are separated by 528 nucleotides
8505 and 8506 are separated by 312 nucleotides
8506 and 8507 are separated by 323 nucleotides
8507 and 8508 are separated by 133 nucleotides
mRNA_136: 8504 - HMMPfam-Aldose 1-epimerase-PF01263,SUPERFAMILY--SSF74650, at 326,050 to 327,675
8504
mRNA_137: 8505 - SUPERFAMILY--SSF53474, at 328,204 to 331,764
8505
mRNA_138: 8506 - KOG4473 Uncharacterized membrane protein, at 332,077 to 333,617
8506
mRNA_139: 8507 - K14538 NUG1, GNL3 nuclear GTP-binding protein, at 333,941 to 336,511
8507
mRNA_140: 8508 - K14571 RIX7, NVL ribosome biogenesis ATPase, at 336,645 to 339,470
8508
Group
Condition
mRNA
_136
mRNA
_137
mRNA
_138
mRNA
_139
mRNA
_140
8504
8505
8506
8507
8508
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.3
-1.7
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.4
-1.2
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.2
-0.7
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.2
-0.9
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
-0.5
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
-0.4
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.2
-0.6
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.0
-0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
-0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.0
-0.3
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.3
-0.8
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.4
-0.7
N.D.
N.D.
auxotrophy
Dropout Complete
+0.0
-0.1
-0.0
N.D.
N.D.
auxotrophy
YNB Glucose
+0.2
-0.0
-0.2
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.3
+0.1
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.2
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.2
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.4
-0.3
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.2
+0.3
-0.1
N.D.
N.D.
growth on ypd
YPD
+0.1
+0.4
+1.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.3
+1.2
N.D.
N.D.
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