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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8508 and 8509 are separated by 507 nucleotides
8509 and 8510 are separated by 915 nucleotides
8510 and 8511 are separated by 468 nucleotides
8511 and 8512 are separated by 437 nucleotides
mRNA_140: 8508 - K14571 RIX7, NVL ribosome biogenesis ATPase, at 336,645 to 339,470
8508
mRNA_141: 8509 - Hypothetical Protein, at 339,978 to 342,089
8509
mRNA_142: 8510 - HMMPfam-Protein of unknown function (DUF3712)-PF12505, at 343,005 to 355,699
8510
mRNA_143: 8511 - KOG4136 Predicted mitochondrial cholesterol transporter, at 356,168 to 357,922
8511
mRNA_144: 8512 - K00698 CHS1 chitin synthase, at 358,360 to 365,387
8512
Group
Condition
mRNA
_140
mRNA
_141
mRNA
_142
mRNA
_143
mRNA
_144
8508
8509
8510
8511
8512
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
+0.1
+0.4
-1.5
growth on ypd
YPD
N.D.
-0.7
+0.1
-0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.0
-0.2
-0.3
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.4
-0.0
+0.2
-0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
-0.0
-0.5
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
+0.3
+0.0
-0.8
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.3
-0.1
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
-0.1
+0.4
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
-0.1
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.4
-0.1
+0.3
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
-0.1
-0.0
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
-0.0
-0.0
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.5
-0.0
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.3
+0.1
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
-0.0
+0.2
-0.0
auxotrophy
YNB Glucose
N.D.
+0.2
+0.0
-0.1
-0.2
growth on oleic acid
YNB Glucose
N.D.
-0.2
-0.0
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
+0.1
+0.2
-0.3
auxotrophy
Dropout Complete
N.D.
+0.4
-0.0
+0.1
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.4
+0.0
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
+0.0
+0.6
+0.4
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