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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8511 and 8512 are separated by 437 nucleotides
8512 and 8513 are separated by 284 nucleotides
8513 and 8514 are separated by 128 nucleotides
8514 and 8515 are separated by 640 nucleotides
mRNA_143: 8511 - KOG4136 Predicted mitochondrial cholesterol transporter, at 356,168 to 357,922
8511
mRNA_144: 8512 - K00698 CHS1 chitin synthase, at 358,360 to 365,387
8512
mRNA_145: 8513 - KOG3299 Uncharacterized conserved protein, at 365,672 to 367,146
8513
mRNA_146: 8514 - HMMPfam-PB1 domain-PF00564,SUPERFAMILY--SSF54277, at 367,275 to 368,042
8514
mRNA_147: 8515 - K20120 BIN3 bridging integrator 3, at 368,683 to 371,935
8515
Group
Condition
mRNA
_143
mRNA
_144
mRNA
_145
mRNA
_146
mRNA
_147
8511
8512
8513
8514
8515
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-1.5
-0.0
N.D.
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.5
-0.0
-0.4
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.2
-0.1
N.D.
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
-0.1
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.8
+0.2
N.D.
+0.4
growth on ypd
YPD
-0.2
-0.2
-0.3
N.D.
+0.4
growth on ricinoleic acid
YNB Glucose
-0.0
-0.2
+0.4
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.0
-0.0
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+0.2
-0.3
+0.2
N.D.
+0.1
auxotrophy
YNB Glucose
-0.1
-0.2
+0.3
N.D.
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.4
+0.5
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.2
+0.1
N.D.
+0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.3
+0.2
N.D.
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.5
+0.8
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.5
+0.5
N.D.
+0.5
growth on oleic acid
YNB Glucose
+0.1
+0.1
+0.3
N.D.
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.1
+0.4
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.1
+0.1
N.D.
+0.6
auxotrophy
Dropout Complete
+0.1
-0.2
+0.6
N.D.
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.1
+0.7
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.4
-0.0
N.D.
+0.5
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