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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8512 and 8513 are separated by 284 nucleotides
8513 and 8514 are separated by 128 nucleotides
8514 and 8515 are separated by 640 nucleotides
8515 and 8516 are separated by 205 nucleotides
mRNA_144: 8512 - K00698 CHS1 chitin synthase, at 358,360 to 365,387
8512
mRNA_145: 8513 - KOG3299 Uncharacterized conserved protein, at 365,672 to 367,146
8513
mRNA_146: 8514 - HMMPfam-PB1 domain-PF00564,SUPERFAMILY--SSF54277, at 367,275 to 368,042
8514
mRNA_147: 8515 - K20120 BIN3 bridging integrator 3, at 368,683 to 371,935
8515
mRNA_148: 8516 - KOG0254 Predicted transporter (major facilitator superfamily), at 372,141 to 374,463
8516
Group
Condition
mRNA
_144
mRNA
_145
mRNA
_146
mRNA
_147
mRNA
_148
8512
8513
8514
8515
8516
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.5
-0.0
N.D.
-0.3
-0.3
growth on ypd
YPD
-0.2
-0.3
N.D.
+0.4
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.4
N.D.
-0.1
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.8
+0.2
N.D.
+0.4
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.1
N.D.
-0.0
+0.3
growth on ricinoleic acid
YNB Glucose
-0.2
+0.4
N.D.
-0.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.3
+0.2
N.D.
+0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.8
N.D.
-0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
N.D.
+0.0
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.1
N.D.
+0.6
-0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.0
N.D.
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.5
N.D.
+0.5
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.5
N.D.
+0.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.4
N.D.
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.0
N.D.
+0.5
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
N.D.
+0.6
+0.2
growth on oleic acid
YNB Glucose
+0.1
+0.3
N.D.
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.7
N.D.
+0.4
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.2
N.D.
+0.5
+0.3
auxotrophy
YNB Glucose
-0.2
+0.3
N.D.
+0.3
+0.5
auxotrophy
Dropout Complete
-0.2
+0.6
N.D.
+0.6
+0.1
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