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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8514 and 8515 are separated by 640 nucleotides
8515 and 8516 are separated by 205 nucleotides
8516 and 8517 are separated by 408 nucleotides
8517 and 8518 are separated by 419 nucleotides
mRNA_146: 8514 - HMMPfam-PB1 domain-PF00564,SUPERFAMILY--SSF54277, at 367,275 to 368,042
8514
mRNA_147: 8515 - K20120 BIN3 bridging integrator 3, at 368,683 to 371,935
8515
mRNA_148: 8516 - KOG0254 Predicted transporter (major facilitator superfamily), at 372,141 to 374,463
8516
mRNA_149: 8517 - Hypothetical Protein, at 374,872 to 375,333
8517
mRNA_150: 8518 - HMMPfam-Beta-glucan synthesis-associated protein (SKN1)-PF03935,SUPERFAMILY--SSF49899, at 375,753 to 378,108
8518
Group
Condition
mRNA
_146
mRNA
_147
mRNA
_148
mRNA
_149
mRNA
_150
8514
8515
8516
8517
8518
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.0
+0.3
-0.4
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.0
+0.0
+0.1
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
-0.0
+0.3
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.4
-0.2
-0.1
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
-0.2
+0.1
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
+0.0
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.5
-0.2
-0.0
-0.3
growth on ypd
YPD
N.D.
+0.4
-0.2
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.3
+0.3
-0.5
growth on oleic acid
YNB Glucose
N.D.
+0.3
+0.1
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.6
-0.6
+0.4
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
+0.2
-0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.3
-0.3
+0.9
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.5
-0.3
+0.5
-0.1
auxotrophy
Dropout Complete
N.D.
+0.6
+0.1
+0.3
-0.5
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
+0.4
+0.3
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.4
+0.1
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.5
+0.3
+0.4
-0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
+0.2
+0.4
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.6
+0.2
+0.2
-0.0
auxotrophy
YNB Glucose
N.D.
+0.3
+0.5
+0.4
-0.1
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