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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8515 and 8516 are separated by 205 nucleotides
8516 and 8517 are separated by 408 nucleotides
8517 and 8518 are separated by 419 nucleotides
8518 and 8519 are separated by 956 nucleotides
mRNA_147: 8515 - K20120 BIN3 bridging integrator 3, at 368,683 to 371,935
8515
mRNA_148: 8516 - KOG0254 Predicted transporter (major facilitator superfamily), at 372,141 to 374,463
8516
mRNA_149: 8517 - Hypothetical Protein, at 374,872 to 375,333
8517
mRNA_150: 8518 - HMMPfam-Beta-glucan synthesis-associated protein (SKN1)-PF03935,SUPERFAMILY--SSF49899, at 375,753 to 378,108
8518
mRNA_151: 8519 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 379,065 to 379,994
8519
Group
Condition
mRNA
_147
mRNA
_148
mRNA
_149
mRNA
_150
mRNA
_151
8515
8516
8517
8518
8519
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.3
-0.4
-0.1
-1.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
-0.0
-0.1
-0.6
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.3
+0.3
-0.5
-0.3
growth on ypd
YPD
+0.4
-0.2
-0.2
-0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.0
+0.3
-0.4
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.2
-0.1
-0.2
+0.0
growth on oleic acid
YNB Oleic Acid
+0.1
+0.0
-0.2
-0.0
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.0
+0.1
-0.4
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.2
-0.0
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
-0.6
+0.4
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
+0.1
-0.1
+0.3
auxotrophy
Dropout Complete
+0.6
+0.1
+0.3
-0.5
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.4
+0.3
-0.1
-0.2
growth on oleic acid
YNB Glucose
+0.3
+0.1
+0.1
-0.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.2
+0.4
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.3
+0.5
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.3
+0.4
-0.5
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.6
+0.2
+0.2
-0.0
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.1
+0.2
-0.2
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.3
+0.9
+0.1
+0.7
auxotrophy
YNB Glucose
+0.3
+0.5
+0.4
-0.1
+0.1
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