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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8522 and 8523 are separated by 507 nucleotides
8523 and 8524 are separated by 332 nucleotides
8524 and 8525 are separated by 679 nucleotides
8525 and 8526 are separated by 179 nucleotides
mRNA_154: 8522 - Hypothetical Protein, at 384,974 to 388,118
8522
mRNA_155: 8523 - K20069 NECAP1_2 adaptin ear-binding coat-associated protein 1/2, at 388,626 to 389,791
8523
mRNA_156: 8524 - Hypothetical Protein, at 390,124 to 390,698
8524
mRNA_157: 8525 - KOG3066 Translin-associated protein X, at 391,378 to 392,552
8525
mRNA_158: 8526 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 392,732 to 393,571
8526
Group
Condition
mRNA
_154
mRNA
_155
mRNA
_156
mRNA
_157
mRNA
_158
8522
8523
8524
8525
8526
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.7
-0.1
-0.7
-0.8
growth on oleic acid
YNB Glucose
+0.3
-0.5
+0.1
-0.1
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.5
-0.2
+0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.4
-0.4
-0.6
+0.9
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
-0.1
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.5
+0.7
+0.0
-0.8
auxotrophy
YNB Glucose
+0.3
-0.2
+0.2
+0.1
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
-0.1
+0.1
+0.5
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.3
+0.3
+0.0
-0.2
auxotrophy
Dropout Complete
+0.3
-0.3
+0.6
-0.4
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.0
+0.2
+0.5
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.5
+0.1
+0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
+0.4
+0.4
-0.5
growth on ricinoleic acid
YNB Glucose
+0.0
+0.2
+0.3
+0.1
-0.3
growth on ypd
YPD
-0.1
+0.1
+0.4
-0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.2
+0.3
+0.1
+0.6
growth on oleic acid
YNB Oleic Acid
+0.0
+0.1
+0.4
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.1
+0.2
+1.3
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
-0.4
+0.3
+1.6
-0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.3
+0.7
+0.9
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.0
+0.5
+1.9
-0.2
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