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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8525 and 8526 are separated by 179 nucleotides
8526 and 8527 are separated by 922 nucleotides
8527 and 8528 are separated by 734 nucleotides
8528 and 8529 are separated by 889 nucleotides
mRNA_157: 8525 - KOG3066 Translin-associated protein X, at 391,378 to 392,552
8525
mRNA_158: 8526 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 392,732 to 393,571
8526
mRNA_159: 8527 - Hypothetical Protein, at 394,494 to 395,592
8527
mRNA_160: 8528 - K05349 bglX beta-glucosidase, at 396,327 to 398,883
8528
mRNA_161: 8529 - KOG1727 Microtubule-binding protein (translationally controlled tumor protein), at 399,773 to 400,854
8529
Group
Condition
mRNA
_157
mRNA
_158
mRNA
_159
mRNA
_160
mRNA
_161
8525
8526
8527
8528
8529
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-0.8
+0.2
-0.1
N.D.
auxotrophy
Dropout Complete
-0.4
-0.2
-0.1
-0.5
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.8
-0.1
-0.2
N.D.
growth on oleic acid
YNB Glucose
-0.1
-0.4
-0.1
-0.4
N.D.
auxotrophy
YNB Glucose
+0.1
-0.6
-0.1
-0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.2
-0.0
-0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.4
-0.5
+0.0
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
-0.3
+0.0
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.1
+0.0
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-0.3
-0.0
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.0
-0.1
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
+0.4
-0.1
-0.1
+0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.0
-0.2
-0.1
N.D.
growth on ypd
YPD
-0.2
+0.2
+0.3
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.6
-0.9
+0.2
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.6
+0.3
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.3
-0.6
-0.2
+0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.9
+0.1
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.9
-0.1
+0.1
-0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.3
+0.2
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.9
-0.2
+0.2
+0.2
N.D.
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