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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8528 and 8529 are separated by 889 nucleotides
8529 and 8530 are separated by 512 nucleotides
8530 and 8531 are separated by 259 nucleotides
8531 and 8532 are separated by 299 nucleotides
mRNA_160: 8528 - K05349 bglX beta-glucosidase, at 396,327 to 398,883
8528
mRNA_161: 8529 - KOG1727 Microtubule-binding protein (translationally controlled tumor protein), at 399,773 to 400,854
8529
mRNA_162: 8530 - BLAST NADH dehydrogenase [ubiquinone] 1 alpha subcomplex su..., at 401,367 to 403,016
8530
mRNA_163: 8531 - Hypothetical Protein, at 403,276 to 404,295
8531
mRNA_164: 8532 - Hypothetical Protein, at 404,595 to 407,143
8532
Group
Condition
mRNA
_160
mRNA
_161
mRNA
_162
mRNA
_163
mRNA
_164
8528
8529
8530
8531
8532
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
N.D.
-0.7
-0.3
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
N.D.
-0.4
-0.4
-0.2
auxotrophy
Dropout Complete
-0.5
N.D.
-0.3
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
N.D.
-0.5
-0.2
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.1
-0.6
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
-0.4
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
-0.0
-0.4
+0.1
auxotrophy
YNB Glucose
-0.3
N.D.
-0.2
-0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
N.D.
-0.2
+0.4
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.0
N.D.
-0.2
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
-0.9
+0.5
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
-0.4
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
-0.3
+0.1
-0.0
growth on oleic acid
YNB Glucose
-0.4
N.D.
-0.1
+0.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
+0.1
+0.3
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
-0.1
+0.4
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
N.D.
+0.8
-0.9
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.3
N.D.
+0.2
+0.4
-0.0
growth on oleic acid
YNB Oleic Acid
+0.0
N.D.
-0.1
+0.4
+0.2
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
+0.4
+0.6
+0.0
growth on ypd
YPD
+0.1
N.D.
+0.7
+0.5
-0.2
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