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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8538 and 8539 are separated by 161 nucleotides
8539 and 8540 are separated by 499 nucleotides
8540 and 8541 are separated by 381 nucleotides
8541 and 8542 are separated by 456 nucleotides
mRNA_170: 8538 - K12179 COPS6, CSN6 COP9 signalosome complex subunit 6, at 417,604 to 419,070
8538
mRNA_171: 8539 - K03237 EIF2S1 translation initiation factor 2 subunit 1, at 419,232 to 420,600
8539
mRNA_172: 8540 - K14264 BNA3 kynurenine aminotransferase, at 421,100 to 422,861
8540
mRNA_173: 8541 - ProSiteProfiles-F-box domain profile.-PS50181, at 423,243 to 425,969
8541
mRNA_174: 8542 - HMMPfam-Glyoxal oxidase N-terminus-PF07250,HMMPfam-Domain of unknown function (DUF1929)-PF09118,SUPERFAMILY--SSF50965,SUPERFAMILY--SSF81296, at 426,426 to 428,792
8542
Group
Condition
mRNA
_170
mRNA
_171
mRNA
_172
mRNA
_173
mRNA
_174
8538
8539
8540
8541
8542
facs on lipid accumulation
Sorted No BODIPY Gate
-1.0
N.D.
-0.0
+0.2
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
N.D.
-0.1
-0.2
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-1.3
N.D.
+0.1
+0.4
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.0
N.D.
-0.3
+0.4
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
N.D.
-0.1
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
N.D.
-0.0
-0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.2
N.D.
+0.2
+0.3
+0.1
auxotrophy
Dropout Complete
-0.5
N.D.
-0.4
+0.4
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.5
N.D.
-0.2
+0.4
-0.1
growth on ricinoleic acid
YNB Glucose
-0.5
N.D.
-0.2
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
N.D.
-0.1
-0.1
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
N.D.
-0.5
+0.1
+0.2
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
+0.2
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
-0.0
-0.1
+0.2
growth on ypd
YPD
+0.1
N.D.
+0.0
+0.5
-0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.3
N.D.
+0.2
+0.2
-0.4
growth on oleic acid
YNB Glucose
+0.2
N.D.
-0.0
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
N.D.
+0.2
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.5
N.D.
-0.1
+0.6
+0.3
auxotrophy
YNB Glucose
-0.4
N.D.
-0.1
+0.4
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
+0.2
+0.0
-0.1
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