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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8539 and 8540 are separated by 499 nucleotides
8540 and 8541 are separated by 381 nucleotides
8541 and 8542 are separated by 456 nucleotides
8542 and 8543 are separated by 677 nucleotides
mRNA_171: 8539 - K03237 EIF2S1 translation initiation factor 2 subunit 1, at 419,232 to 420,600
8539
mRNA_172: 8540 - K14264 BNA3 kynurenine aminotransferase, at 421,100 to 422,861
8540
mRNA_173: 8541 - ProSiteProfiles-F-box domain profile.-PS50181, at 423,243 to 425,969
8541
mRNA_174: 8542 - HMMPfam-Glyoxal oxidase N-terminus-PF07250,HMMPfam-Domain of unknown function (DUF1929)-PF09118,SUPERFAMILY--SSF50965,SUPERFAMILY--SSF81296, at 426,426 to 428,792
8542
mRNA_175: 8543 - KOG2533 Permease of the major facilitator superfamily, at 429,470 to 431,854
8543
Group
Condition
mRNA
_171
mRNA
_172
mRNA
_173
mRNA
_174
mRNA
_175
8539
8540
8541
8542
8543
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.0
+0.2
-0.7
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.4
-0.2
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.1
-0.2
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
-0.1
-0.0
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.0
-0.3
-0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.3
+0.4
-0.0
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.5
+0.1
+0.2
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
+0.2
-0.3
-0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
+0.2
-0.3
-0.2
growth on oleic acid
YNB Glucose
N.D.
-0.0
+0.1
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
+0.4
-0.1
-0.2
auxotrophy
Dropout Complete
N.D.
-0.4
+0.4
+0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.2
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.0
-0.1
+0.2
-0.0
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
+0.1
+0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
+0.4
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
+0.0
-0.1
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
+0.3
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
+0.6
+0.3
-0.3
growth on ypd
YPD
N.D.
+0.0
+0.5
-0.5
+0.6
auxotrophy
YNB Glucose
N.D.
-0.1
+0.4
+0.4
-0.1
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