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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8540 and 8541 are separated by 381 nucleotides
8541 and 8542 are separated by 456 nucleotides
8542 and 8543 are separated by 677 nucleotides
8543 and 8544 are separated by 675 nucleotides
mRNA_172: 8540 - K14264 BNA3 kynurenine aminotransferase, at 421,100 to 422,861
8540
mRNA_173: 8541 - ProSiteProfiles-F-box domain profile.-PS50181, at 423,243 to 425,969
8541
mRNA_174: 8542 - HMMPfam-Glyoxal oxidase N-terminus-PF07250,HMMPfam-Domain of unknown function (DUF1929)-PF09118,SUPERFAMILY--SSF50965,SUPERFAMILY--SSF81296, at 426,426 to 428,792
8542
mRNA_175: 8543 - KOG2533 Permease of the major facilitator superfamily, at 429,470 to 431,854
8543
mRNA_176: 8544 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 432,530 to 433,945
8544
Group
Condition
mRNA
_172
mRNA
_173
mRNA
_174
mRNA
_175
mRNA
_176
8540
8541
8542
8543
8544
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.4
-0.2
-0.3
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.1
+0.2
-0.1
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.2
-0.7
-0.5
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.3
-0.1
-0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.2
-0.4
-0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.4
-0.2
-0.1
-0.7
growth on oleic acid
YNB Glucose
-0.0
+0.1
+0.1
-0.2
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.4
-0.0
-0.5
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.1
-0.0
-0.4
+0.4
growth on oleic acid
YNB Oleic Acid
+0.2
+0.2
-0.3
-0.3
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.2
-0.3
-0.2
+0.0
growth on ricinoleic acid
YNB Glucose
-0.2
+0.1
+0.2
-0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.2
-0.4
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.1
+0.2
-0.0
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.0
-0.1
-0.0
+0.0
auxotrophy
Dropout Complete
-0.4
+0.4
+0.1
-0.2
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.3
+0.1
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.4
-0.1
-0.2
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.6
+0.3
-0.3
+0.3
growth on ypd
YPD
+0.0
+0.5
-0.5
+0.6
+0.3
auxotrophy
YNB Glucose
-0.1
+0.4
+0.4
-0.1
+0.6
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