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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8543 and 8544 are separated by 675 nucleotides
8544 and 8545 are separated by 171 nucleotides
8545 and 8546 are separated by 383 nucleotides
8546 and 8547 are separated by 144 nucleotides
mRNA_175: 8543 - KOG2533 Permease of the major facilitator superfamily, at 429,470 to 431,854
8543
mRNA_176: 8544 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 432,530 to 433,945
8544
mRNA_177: 8545 - KOG4096 Uncharacterized conserved protein, at 434,117 to 434,779
8545
mRNA_178: 8546 - K00974 cca tRNA nucleotidyltransferase (CCA-adding enzyme), at 435,163 to 437,748
8546
mRNA_179: 8547 - KOG2886 Uncharacterized conserved protein, at 437,893 to 438,740
8547
Group
Condition
mRNA
_175
mRNA
_176
mRNA
_177
mRNA
_178
mRNA
_179
8543
8544
8545
8546
8547
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.1
-0.9
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.9
-0.5
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.5
-0.5
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.7
-0.4
N.D.
+0.0
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
-0.4
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.2
+0.1
N.D.
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.3
-0.2
N.D.
+0.0
growth on oleic acid
YNB Glucose
-0.2
-0.3
-0.1
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.2
-0.6
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.0
+0.0
N.D.
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.2
-0.2
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
+0.1
N.D.
-0.3
growth on oleic acid
YNB Oleic Acid
-0.3
-0.0
+0.0
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.0
+0.0
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.0
-0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.4
+0.2
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.4
+1.3
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.3
+1.5
N.D.
-0.1
auxotrophy
Dropout Complete
-0.2
+0.3
+1.5
N.D.
-0.1
auxotrophy
YNB Glucose
-0.1
+0.6
+1.4
N.D.
+0.2
growth on ypd
YPD
+0.6
+0.3
+0.6
N.D.
+1.3
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