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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8545 and 8546 are separated by 383 nucleotides
8546 and 8547 are separated by 144 nucleotides
8547 and 8548 are separated by 202 nucleotides
8548 and 8549 are separated by 595 nucleotides
mRNA_177: 8545 - KOG4096 Uncharacterized conserved protein, at 434,117 to 434,779
8545
mRNA_178: 8546 - K00974 cca tRNA nucleotidyltransferase (CCA-adding enzyme), at 435,163 to 437,748
8546
mRNA_179: 8547 - KOG2886 Uncharacterized conserved protein, at 437,893 to 438,740
8547
mRNA_180: 8548 - K01647 CS, gltA citrate synthase, at 438,943 to 441,127
8548
mRNA_181: 8549 - K12870 ISY1 pre-mRNA-splicing factor ISY1, at 441,723 to 442,875
8549
Group
Condition
mRNA
_177
mRNA
_178
mRNA
_179
mRNA
_180
mRNA
_181
8545
8546
8547
8548
8549
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
N.D.
-0.1
-0.7
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
N.D.
+0.1
-0.8
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
N.D.
+0.0
-0.8
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-0.6
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
N.D.
-0.1
-0.5
N.D.
growth on ricinoleic acid
YNB Glucose
-0.4
N.D.
-0.3
-0.4
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
+0.0
-0.5
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
+0.2
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
+0.1
-0.4
N.D.
growth on oleic acid
YNB Glucose
-0.1
N.D.
+0.1
-0.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
N.D.
+0.1
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
N.D.
-0.4
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
-0.3
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.0
N.D.
+0.1
-0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
+0.1
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
+0.2
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+1.5
N.D.
-0.1
-0.6
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+1.3
N.D.
-0.0
-0.3
N.D.
auxotrophy
Dropout Complete
+1.5
N.D.
-0.1
-0.3
N.D.
auxotrophy
YNB Glucose
+1.4
N.D.
+0.2
-0.3
N.D.
growth on ypd
YPD
+0.6
N.D.
+1.3
-0.2
N.D.
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