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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8550 and 8551 are separated by 207 nucleotides
8551 and 8552 are separated by 126 nucleotides
8552 and 8553 are separated by 314 nucleotides
8553 and 8554 are separated by 387 nucleotides
mRNA_182: 8550 - K19828 MTG1 mitochondrial GTPase 1, at 442,975 to 444,845
8550
mRNA_183: 8551 - KOG4463 Uncharacterized conserved protein, at 445,053 to 446,538
8551
mRNA_184: 8552 - KOG1286 Amino acid transporters, at 446,665 to 448,836
8552
mRNA_185: 8553 - K11874 UBP16 ubiquitin carboxyl-terminal hydrolase 16, at 449,151 to 451,288
8553
mRNA_186: 8554 - Hypothetical Protein, at 451,676 to 453,998
8554
Group
Condition
mRNA
_182
mRNA
_183
mRNA
_184
mRNA
_185
mRNA
_186
8550
8551
8552
8553
8554
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-2.1
-0.5
+0.1
+0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
-1.3
+0.0
+0.0
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.0
-0.2
-0.1
-0.2
growth on ypd
YPD
-0.4
-0.2
-0.1
-0.0
+0.1
growth on ricinoleic acid
YNB Glucose
+0.3
-0.0
-0.2
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.4
-0.0
-0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.3
+0.0
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.1
-0.6
-0.3
+0.0
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-1.0
+0.0
+0.0
+0.5
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.4
-0.1
-0.2
-0.2
growth on oleic acid
YNB Oleic Acid
-0.0
-0.5
+0.2
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
-0.4
-0.0
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
+0.2
+0.0
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.1
-0.3
+0.2
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
+0.6
+0.0
-0.3
-0.2
auxotrophy
Dropout Complete
+1.0
-0.1
+0.0
+0.2
-0.3
auxotrophy
YNB Glucose
+1.4
-0.4
+0.1
+0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+1.8
-0.3
-0.1
+0.1
-0.1
growth on oleic acid
YNB Glucose
+0.9
-0.1
-0.1
+0.3
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.8
+0.2
+0.3
+0.2
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+1.4
-0.0
+0.2
+0.3
-0.3
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