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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8553 and 8554 are separated by 387 nucleotides
8554 and 8555 are separated by 536 nucleotides
8555 and 8556 are separated by 135 nucleotides
8556 and 8557 are separated by 644 nucleotides
mRNA_185: 8553 - K11874 UBP16 ubiquitin carboxyl-terminal hydrolase 16, at 449,151 to 451,288
8553
mRNA_186: 8554 - Hypothetical Protein, at 451,676 to 453,998
8554
mRNA_187: 8555 - Hypothetical Protein, at 454,535 to 455,556
8555
mRNA_188: 8556 - K14536 RIA1 ribosome assembly protein 1, at 455,692 to 459,820
8556
mRNA_189: 8557 - Hypothetical Protein, at 460,465 to 463,611
8557
Group
Condition
mRNA
_185
mRNA
_186
mRNA
_187
mRNA
_188
mRNA
_189
8553
8554
8555
8556
8557
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.4
+0.1
N.D.
-0.4
growth on ricinoleic acid
YNB Glucose
-0.2
-0.3
+0.2
N.D.
-0.3
growth on ypd
YPD
-0.0
+0.1
-0.1
N.D.
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.2
+0.1
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.2
+0.4
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.2
+0.6
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.1
+0.2
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
+0.3
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
+0.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
+0.3
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.3
+0.4
N.D.
+0.2
growth on oleic acid
YNB Glucose
+0.3
+0.3
-0.1
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.3
+0.3
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
+0.2
+0.3
-0.2
N.D.
+0.0
auxotrophy
Dropout Complete
+0.2
-0.3
+0.4
N.D.
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.3
+0.0
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.3
+0.3
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.0
+0.5
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.2
+0.4
N.D.
+0.1
auxotrophy
YNB Glucose
+0.2
-0.4
+0.7
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
+0.5
+0.2
N.D.
+0.1
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