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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8560 and 8561 are separated by 354 nucleotides
8561 and 8562 are separated by 1018 nucleotides
8562 and 8563 are separated by 177 nucleotides
8563 and 8564 are separated by 160 nucleotides
mRNA_192: 8560 - HMMPfam-SUR7/PalI family-PF06687, at 467,837 to 468,649
8560
mRNA_193: 8561 - K14573 NOP4, RBM28 nucleolar protein 4, at 469,004 to 472,832
8561
mRNA_194: 8562 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 473,851 to 475,704
8562
mRNA_195: 8563 - K14570 REX1, REXO1, RNH70 RNA exonuclease 1, at 475,882 to 478,455
8563
mRNA_196: 8564 - K11230 SSK2 mitogen-activated protein kinase kinase kinase, at 478,616 to 483,273
8564
Group
Condition
mRNA
_192
mRNA
_193
mRNA
_194
mRNA
_195
mRNA
_196
8560
8561
8562
8563
8564
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
-0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
-0.7
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
N.D.
-0.5
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
N.D.
-0.3
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.1
N.D.
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
+0.0
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
N.D.
-0.4
N.D.
N.D.
growth on ypd
YPD
+0.2
N.D.
-0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
-0.1
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
+0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
N.D.
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.3
N.D.
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.8
N.D.
+0.0
N.D.
N.D.
auxotrophy
Dropout Complete
+0.6
N.D.
+0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+1.1
N.D.
+0.0
N.D.
N.D.
auxotrophy
YNB Glucose
+0.8
N.D.
+0.4
N.D.
N.D.
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