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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8563 and 8564 are separated by 160 nucleotides
8564 and 8565 are separated by 250 nucleotides
8565 and 8566 are separated by 285 nucleotides
8566 and 8567 are separated by 437 nucleotides
mRNA_195: 8563 - K14570 REX1, REXO1, RNH70 RNA exonuclease 1, at 475,882 to 478,455
8563
mRNA_196: 8564 - K11230 SSK2 mitogen-activated protein kinase kinase kinase, at 478,616 to 483,273
8564
mRNA_197: 8565 - K14765 NGDN, LCP5 U3 small nucleolar ribonucleoprotein protein LCP5, at 483,524 to 484,817
8565
mRNA_198: 8566 - K02952 RP-S13, rpsM small subunit ribosomal protein S13, at 485,103 to 485,929
8566
mRNA_199: 8567 - Hypothetical Protein, at 486,367 to 488,620
8567
Group
Condition
mRNA
_195
mRNA
_196
mRNA
_197
mRNA
_198
mRNA
_199
8563
8564
8565
8566
8567
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
N.D.
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
N.D.
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
N.D.
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
N.D.
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
N.D.
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
N.D.
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
N.D.
N.D.
-0.1
auxotrophy
YNB Glucose
N.D.
N.D.
N.D.
N.D.
-0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
N.D.
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
N.D.
-0.1
auxotrophy
Dropout Complete
N.D.
N.D.
N.D.
N.D.
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
N.D.
-0.0
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
N.D.
N.D.
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
N.D.
N.D.
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
N.D.
+0.0
growth on ypd
YPD
N.D.
N.D.
N.D.
N.D.
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
N.D.
N.D.
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
N.D.
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
N.D.
N.D.
+0.2
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