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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8571 and 8572 are separated by 17 nucleotides
8572 and 8573 are separated by 200 nucleotides
8573 and 8574 are separated by 1422 nucleotides
8574 and 8575 are separated by 1962 nucleotides
mRNA_203: 8571 - SUPERFAMILY--SSF51197, at 499,764 to 500,298
8571
mRNA_204: 8572 - Hypothetical Protein, at 500,316 to 500,871
8572
mRNA_205: 8573 - KOG4267 Predicted membrane protein, at 501,072 to 501,667
8573
mRNA_206: 8574 - KOG0603 Ribosomal protein S6 kinase, at 503,090 to 504,560
8574
mRNA_207: 8575 - K01892 HARS, hisS histidyl-tRNA synthetase, at 506,523 to 508,733
8575
Group
Condition
mRNA
_203
mRNA
_204
mRNA
_205
mRNA
_206
mRNA
_207
8571
8572
8573
8574
8575
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
-0.1
-2.7
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
-0.3
-0.4
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.2
-0.3
-0.4
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.0
-0.2
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.2
+0.0
-0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
+0.0
+0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
+0.4
-0.3
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
+0.1
-0.0
-0.3
N.D.
auxotrophy
Dropout Complete
+0.3
-0.2
-0.0
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
+0.0
-0.4
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.2
+0.1
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.0
+0.1
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.2
+1.1
-0.5
N.D.
growth on ypd
YPD
+0.4
+0.1
-0.1
+0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
+0.3
+0.4
-0.7
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
+0.6
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.1
+1.1
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.0
+0.8
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.0
+0.2
+0.0
N.D.
growth on oleic acid
YNB Glucose
+0.4
-0.0
+0.4
-0.0
N.D.
auxotrophy
YNB Glucose
+0.6
+0.1
+0.2
+0.1
N.D.
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