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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8572 and 8573 are separated by 200 nucleotides
8573 and 8574 are separated by 1422 nucleotides
8574 and 8575 are separated by 1962 nucleotides
8575 and 8576 are separated by 405 nucleotides
mRNA_204: 8572 - Hypothetical Protein, at 500,316 to 500,871
8572
mRNA_205: 8573 - KOG4267 Predicted membrane protein, at 501,072 to 501,667
8573
mRNA_206: 8574 - KOG0603 Ribosomal protein S6 kinase, at 503,090 to 504,560
8574
mRNA_207: 8575 - K01892 HARS, hisS histidyl-tRNA synthetase, at 506,523 to 508,733
8575
mRNA_208: 8576 - K19270 yfbT, yniC sugar-phosphatase, at 509,139 to 510,075
8576
Group
Condition
mRNA
_204
mRNA
_205
mRNA
_206
mRNA
_207
mRNA
_208
8572
8573
8574
8575
8576
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-2.7
+0.1
N.D.
+0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.2
-0.1
N.D.
-0.8
growth on ricinoleic acid
YNB Glucose
-0.2
-0.3
-0.4
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.4
-0.0
N.D.
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.3
-0.4
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
-0.0
-0.3
N.D.
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.4
-0.7
N.D.
-0.5
auxotrophy
Dropout Complete
-0.2
-0.0
-0.1
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.1
-0.1
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.2
+0.0
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.4
-0.3
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.0
+0.0
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.0
-0.2
N.D.
+0.6
growth on ypd
YPD
+0.1
-0.1
+0.0
N.D.
+0.2
growth on oleic acid
YNB Glucose
-0.0
+0.4
-0.0
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+1.1
-0.5
N.D.
+0.0
auxotrophy
YNB Glucose
+0.1
+0.2
+0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.1
+0.1
N.D.
+0.6
ypd buoyancy
40 hrs High Buoyancy
-0.1
+1.1
-0.0
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.8
-0.2
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.6
+0.1
N.D.
+0.8
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