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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8578 and 8579 are separated by 357 nucleotides
8579 and 8580 are separated by 645 nucleotides
8580 and 8581 are separated by 136 nucleotides
8581 and 8582 are separated by 2079 nucleotides
mRNA_210: 8578 - K08675 PRSS15, PIM1 Lon-like ATP-dependent protease, at 515,116 to 519,191
8578
mRNA_211: 8579 - K00432 gpx glutathione peroxidase, at 519,549 to 520,466
8579
mRNA_212: 8580 - K01194 TREH, treA, treF alpha,alpha-trehalase, at 521,112 to 523,919
8580
mRNA_213: 8581 - KOG1362 Choline transporter-like protein, at 524,056 to 525,912
8581
mRNA_214: 8582 - Hypothetical Protein, at 527,992 to 533,023
8582
Group
Condition
mRNA
_210
mRNA
_211
mRNA
_212
mRNA
_213
mRNA
_214
8578
8579
8580
8581
8582
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.5
-0.6
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.1
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.1
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.1
-0.4
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.2
-0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.0
-0.1
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.0
-0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
-0.2
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.1
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.2
-0.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.0
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.1
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.0
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.0
-0.2
+0.2
auxotrophy
Dropout Complete
N.D.
N.D.
-0.0
+0.0
+0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.1
+0.4
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.2
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.1
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.0
+0.5
-0.1
growth on ypd
YPD
N.D.
N.D.
+0.2
+0.3
-0.1
auxotrophy
YNB Glucose
N.D.
N.D.
+0.1
+0.3
+0.2
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