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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8580 and 8581 are separated by 136 nucleotides
8581 and 8582 are separated by 2079 nucleotides
8582 and 8583 are separated by 757 nucleotides
8583 and 8584 are separated by 290 nucleotides
mRNA_212: 8580 - K01194 TREH, treA, treF alpha,alpha-trehalase, at 521,112 to 523,919
8580
mRNA_213: 8581 - KOG1362 Choline transporter-like protein, at 524,056 to 525,912
8581
mRNA_214: 8582 - Hypothetical Protein, at 527,992 to 533,023
8582
mRNA_215: 8583 - Hypothetical Protein, at 533,781 to 534,618
8583
mRNA_216: 8584 - BLAST protein of choline transporter-like family [Rhodo..., at 534,909 to 538,209
8584
Group
Condition
mRNA
_212
mRNA
_213
mRNA
_214
mRNA
_215
mRNA
_216
8580
8581
8582
8583
8584
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.4
-0.1
-0.8
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.4
+0.0
-0.7
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.3
-0.2
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.3
+0.2
-0.4
-0.1
growth on ricinoleic acid
YNB Glucose
+0.0
-0.3
-0.1
-0.4
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.6
-0.0
+0.5
-0.2
growth on oleic acid
YNB Glucose
-0.1
+0.4
-0.1
-0.7
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.1
-0.1
-0.5
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.0
-0.0
-0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.1
-0.1
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.2
+0.2
-0.3
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.1
-0.2
+0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
-0.1
+0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.2
-0.0
+0.3
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.1
-0.0
+0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.0
+0.1
-0.4
+0.2
auxotrophy
Dropout Complete
-0.0
+0.0
+0.1
+0.1
+0.0
growth on oleic acid
YNB Oleic Acid
-0.0
+0.5
-0.1
+0.0
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
+0.1
+0.2
-0.1
growth on ypd
YPD
+0.2
+0.3
-0.1
-0.0
+0.3
auxotrophy
YNB Glucose
+0.1
+0.3
+0.2
+0.3
+0.0
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