Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 8586 and 8587 are separated by 398 nucleotides8587 and 8588 are separated by 330 nucleotides8588 and 8589 are separated by 482 nucleotides8589 and 8590 are separated by 215 nucleotides mRNA_218: 8586 - Hypothetical Protein, at 540,999 to 541,232 8586 mRNA_219: 8587 - Hypothetical Protein, at 541,631 to 542,423 8587 mRNA_220: 8588 - K11159 K11159 carotenoid cleavage dioxygenase, at 542,754 to 544,832 8588 mRNA_221: 8589 - HMMPfam-Squalene/phytoene synthase-PF00494,ProSitePatterns-Squalene and phytoene synthases signature 2.-PS01045,SUPERFAMILY--SSF48576,TIGRFAM-CarR_dom_SF lycopene cyclase domain-TIGR03462, at 545,315 to 547,571 8589 mRNA_222: 8590 - K12795 SUGT1, SGT1 suppressor of G2 allele of SKP1, at 547,787 to 548,767 8590
Group Condition mRNA_218 mRNA_219 mRNA_220 mRNA_221 mRNA_222
8586 8587 8588 8589 8590
facs on lipid accumulation Sorted Low BODIPY Gate -0.5 -0.4 -0.2 -1.2 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.1 -1.3 -0.4 -0.2 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 -0.5 -0.3 -0.3 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.1 -1.1 -0.0 -0.2 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.3 -1.1 -0.1 +0.1 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.2 -1.0 +0.1 +0.1 N.D.
facs on lipid accumulation Sorted No BODIPY Gate +0.1 -0.5 -0.1 -0.1 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid +0.0 -0.2 -0.2 -0.1 N.D.
auxotrophy YNB Glucose 75mM Methionine +0.2 -0.3 +0.0 -0.3 N.D.
ypd buoyancy 40 hrs Low Buoyancy +0.1 -0.4 -0.0 +0.0 N.D.
growth on oleic acid YNB Glucose -0.2 -0.0 +0.0 -0.0 N.D.
ypd buoyancy 40 hrs High Buoyancy -0.1 -0.1 +0.1 -0.0 N.D.
growth on ricinoleic acid YNB Glucose +0.1 +0.3 -0.0 -0.5 N.D.
growth on oleic acid YNB Oleic Acid -0.1 -0.2 +0.2 +0.2 N.D.
auxotrophy YNB Glucose 75mM Arginine -0.1 +0.2 +0.3 -0.1 N.D.
auxotrophy YNB Glucose +0.2 -0.0 +0.2 -0.1 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid +0.2 +0.3 -0.0 -0.1 N.D.
ypd buoyancy 40 hrs Median Buoyancy -0.0 +0.1 +0.1 +0.2 N.D.
auxotrophy Dropout Complete +0.1 +0.5 +0.3 -0.2 N.D.
growth on ypd YPD +0.4 +0.7 -0.3 +0.1 N.D.
facs on lipid accumulation Sorted High BODIPY Gate -0.1 -0.1 +0.1 +1.1 N.D.
remove
mRNA_218
plot
remove
mRNA_219
plot
remove
mRNA_220
remove
mRNA_221
plot
remove
mRNA_222
plot