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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8592 and 8593 are separated by 423 nucleotides
8593 and 8594 are separated by 83 nucleotides
8594 and 8595 are separated by 246 nucleotides
8595 and 8596 are separated by 651 nucleotides
mRNA_224: 8592 - K07300 chaA, CAX Ca2+-H+ antiporter, at 554,235 to 556,538
8592
mRNA_225: 8593 - KOG0619 FOG Leucine rich repeat, at 556,962 to 559,070
8593
mRNA_226: 8594 - KOG2861 Uncharacterized conserved protein, at 559,154 to 560,792
8594
mRNA_227: 8595 - K03259 EIF4E translation initiation factor 4E, at 561,039 to 562,506
8595
mRNA_228: 8596 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 563,158 to 565,625
8596
Group
Condition
mRNA
_224
mRNA
_225
mRNA
_226
mRNA
_227
mRNA
_228
8592
8593
8594
8595
8596
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.3
-0.2
-1.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-1.8
-0.2
+0.1
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.7
-0.1
+0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-1.2
-0.3
+0.5
+0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-1.3
+0.7
+0.3
-0.4
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.3
-0.5
+0.6
+0.7
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.8
+0.3
+0.1
-0.4
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.7
-0.2
+0.2
+0.3
-0.1
auxotrophy
Dropout Complete
-0.9
-0.3
+0.6
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.2
-0.3
+0.6
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.5
-0.1
+0.9
+0.0
growth on ypd
YPD
+0.6
+0.2
-0.1
-0.4
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.2
+0.0
+0.2
+1.1
-0.1
auxotrophy
YNB Glucose
-0.7
-0.1
+0.3
+0.5
-0.1
growth on oleic acid
YNB Glucose
+0.2
-0.1
+0.0
+0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.6
-0.1
+0.4
+0.0
growth on oleic acid
YNB Oleic Acid
-0.1
-0.3
+0.0
+1.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+2.3
-0.9
-0.0
-0.5
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.5
+0.3
+0.3
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+2.4
-0.5
+0.3
-0.6
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+3.4
-0.2
+0.2
-0.0
+0.2
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