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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8593 and 8594 are separated by 83 nucleotides
8594 and 8595 are separated by 246 nucleotides
8595 and 8596 are separated by 651 nucleotides
8596 and 8597 are separated by 168 nucleotides
mRNA_225: 8593 - KOG0619 FOG Leucine rich repeat, at 556,962 to 559,070
8593
mRNA_226: 8594 - KOG2861 Uncharacterized conserved protein, at 559,154 to 560,792
8594
mRNA_227: 8595 - K03259 EIF4E translation initiation factor 4E, at 561,039 to 562,506
8595
mRNA_228: 8596 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 563,158 to 565,625
8596
mRNA_229: 8597 - Hypothetical Protein, at 565,794 to 566,303
8597
Group
Condition
mRNA
_225
mRNA
_226
mRNA
_227
mRNA
_228
mRNA
_229
8593
8594
8595
8596
8597
growth on ricinoleic acid
YNB Glucose
-0.3
+0.5
+0.2
-0.2
-1.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
-0.0
-0.5
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.2
-1.2
-0.2
+0.9
growth on ypd
YPD
+0.2
-0.1
-0.4
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
+0.2
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.2
+0.3
-0.1
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.1
-0.4
+0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.2
-0.0
+0.2
-0.3
auxotrophy
Dropout Complete
-0.3
+0.6
+0.3
-0.1
-0.6
auxotrophy
YNB Glucose
-0.1
+0.3
+0.5
-0.1
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.3
-0.6
+0.4
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.6
+0.7
-0.1
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.2
+1.1
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
-0.1
+0.2
-0.1
+1.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
+0.3
-0.4
-0.1
+0.5
ypd buoyancy
40 hrs High Buoyancy
+0.5
+0.3
+0.3
+0.3
-0.2
growth on oleic acid
YNB Glucose
-0.1
+0.0
+0.1
+0.0
+1.1
growth on oleic acid
YNB Oleic Acid
-0.3
+0.0
+1.3
-0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.6
-0.1
+0.4
+0.0
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.3
+0.6
+0.0
+1.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.1
+0.9
+0.0
+1.5
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