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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8595 and 8596 are separated by 651 nucleotides
8596 and 8597 are separated by 168 nucleotides
8597 and 8598 are separated by 351 nucleotides
8598 and 8599 are separated by 1314 nucleotides
mRNA_227: 8595 - K03259 EIF4E translation initiation factor 4E, at 561,039 to 562,506
8595
mRNA_228: 8596 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 563,158 to 565,625
8596
mRNA_229: 8597 - Hypothetical Protein, at 565,794 to 566,303
8597
mRNA_230: 8598 - K11254 H4 histone H4, at 566,655 to 568,496
8598
mRNA_231: 8599 - HMMPfam-Urb2/Npa2 family-PF10441,SUPERFAMILY--SSF48371, at 569,811 to 575,068
8599
Group
Condition
mRNA
_227
mRNA
_228
mRNA
_229
mRNA
_230
mRNA
_231
8595
8596
8597
8598
8599
growth on ricinoleic acid
YNB Glucose
+0.2
-0.2
-1.7
-0.0
N.D.
growth on ypd
YPD
-0.4
-0.3
+0.1
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.1
-0.3
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.2
-0.2
+0.9
-0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
+0.1
+0.3
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.1
-0.3
-0.1
N.D.
auxotrophy
Dropout Complete
+0.3
-0.1
-0.6
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.1
-0.4
-0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.2
-0.3
+0.1
N.D.
auxotrophy
YNB Glucose
+0.5
-0.1
-0.6
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
-0.1
-0.4
-0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.3
-0.2
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
+0.4
+0.5
-0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.1
+0.5
+0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.1
-0.1
-0.3
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.0
+0.4
+0.0
N.D.
growth on oleic acid
YNB Glucose
+0.1
+0.0
+1.1
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+1.3
-0.1
+0.3
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.1
+1.5
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+0.0
+1.3
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.9
+0.0
+1.5
-0.1
N.D.
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