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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8598 and 8599 are separated by 1314 nucleotides
8599 and 8600 are separated by 259 nucleotides
8600 and 8601 are separated by 155 nucleotides
8601 and 8602 are separated by 79 nucleotides
mRNA_230: 8598 - K11254 H4 histone H4, at 566,655 to 568,496
8598
mRNA_231: 8599 - HMMPfam-Urb2/Npa2 family-PF10441,SUPERFAMILY--SSF48371, at 569,811 to 575,068
8599
mRNA_232: 8600 - KOG1773 Stress responsive protein, at 575,328 to 575,800
8600
mRNA_233: 8601 - K06287 maf septum formation protein, at 575,956 to 577,138
8601
mRNA_234: 8602 - K00452 HAAO 3-hydroxyanthranilate 3,4-dioxygenase, at 577,218 to 578,179
8602
Group
Condition
mRNA
_230
mRNA
_231
mRNA
_232
mRNA
_233
mRNA
_234
8598
8599
8600
8601
8602
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
N.D.
N.D.
-2.8
-1.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
N.D.
-0.4
-2.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
N.D.
N.D.
-0.3
-1.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
N.D.
N.D.
-0.1
-1.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
N.D.
N.D.
-0.3
-1.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
N.D.
-0.5
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
N.D.
N.D.
-0.3
-1.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
N.D.
-0.7
-0.5
growth on ricinoleic acid
YNB Glucose
-0.0
N.D.
N.D.
-0.9
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
N.D.
N.D.
-0.4
-0.5
auxotrophy
Dropout Complete
+0.0
N.D.
N.D.
+0.3
-1.2
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
N.D.
-0.8
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
N.D.
-0.4
-0.4
auxotrophy
YNB Glucose
+0.2
N.D.
N.D.
-0.3
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
N.D.
-0.1
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
N.D.
N.D.
-0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
N.D.
-0.0
-0.2
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
N.D.
+0.2
-0.6
growth on oleic acid
YNB Glucose
-0.1
N.D.
N.D.
+0.1
+0.0
growth on ypd
YPD
-0.1
N.D.
N.D.
+0.2
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
N.D.
+0.8
-0.3
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