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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8599 and 8600 are separated by 259 nucleotides
8600 and 8601 are separated by 155 nucleotides
8601 and 8602 are separated by 79 nucleotides
8602 and 8603 are separated by 544 nucleotides
mRNA_231: 8599 - HMMPfam-Urb2/Npa2 family-PF10441,SUPERFAMILY--SSF48371, at 569,811 to 575,068
8599
mRNA_232: 8600 - KOG1773 Stress responsive protein, at 575,328 to 575,800
8600
mRNA_233: 8601 - K06287 maf septum formation protein, at 575,956 to 577,138
8601
mRNA_234: 8602 - K00452 HAAO 3-hydroxyanthranilate 3,4-dioxygenase, at 577,218 to 578,179
8602
mRNA_235: 8603 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 578,724 to 580,674
8603
Group
Condition
mRNA
_231
mRNA
_232
mRNA
_233
mRNA
_234
mRNA
_235
8599
8600
8601
8602
8603
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-2.8
-1.3
+1.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.4
-2.3
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.1
-1.6
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.3
-1.3
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.5
-1.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.3
-1.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.7
-0.5
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.2
-0.3
-0.5
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.9
-0.1
+0.1
auxotrophy
YNB Glucose
N.D.
N.D.
-0.3
-0.5
-0.2
auxotrophy
Dropout Complete
N.D.
N.D.
+0.3
-1.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.3
-1.0
+0.6
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.4
-0.5
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.8
-0.1
+0.5
growth on ypd
YPD
N.D.
N.D.
+0.2
+0.2
-0.7
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.4
-0.4
+0.7
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.2
-0.6
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.1
-0.3
+0.5
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.1
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.0
-0.2
+0.9
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.8
-0.3
+0.3
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